- Ammonoosuc River
- Androscoggin River
- Ashuelot River
- Baker River
- Bellamy River
- Black Brook Manchester
- Black Brook Sanbornton
- Blackwater River
- Cain’s Brook
- Cocheco River
- Cold River
- Connecticut River
- Connecticut River & John’s River, Dalton
- Contoocook River
- Exeter River
- Gridley River
- Gunnison Brook
- Hawkins Brook
- Hodgson Brook
- Hooksett Tributaries
- Isinglass River
- Israel River
- Lake Winnipesaukee Tributaries
- Lamprey River
- Mascoma River
- McQuesten Brook
- Meredith Bay Tributaries
- Nashua River
- Oyster River
- Pemigewasset River
- Pennichuck Brook
- Piscataquog River
- Powwow River
- Saco River
- Salmon Falls River
- Smith River
- Soucook River
- Sucker Brook
- Sugar River
- Warner River
- Waterville Valley Tributaries
- Wild Ammonusuc River
- Wildcat Brook, Great Brook, Ellis River
- Winnicut River
Report, Data and Maps